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Publications
Beaulaurier J., Luo E., Eppley J.M., Uyl P.D., Dai X., Burger A., Turner D.J., Pendelton M., Juul S., Harrington E., DeLong E.F. 2020. Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities. Genome Res. 30:437-446. doi: 10.1101/gr.251686.119.
Goldin S, Hulata Y, Baran N, Lindell D. 2020. Quantification of T4-Like and T7-Like cyanophages using the polony method show they are significant members of the virioplankton in the North Pacific Subtropical Gyre. Frontiers in Microbiology 11:1210. doi: 10.3389/fmicb.2020.01210.
Gradoville, M.R., Farnelid, H., White, A.E., Turk‐Kubo, K.A., Stewart, B., Ribalet, F., Ferron, S., Pinedo‐Gonzalez, P., Armbrust, E.V., Karl, D.M., John, S. and Zehr, J.P. (2020), Latitudinal constraints on the abundance and activity of the cyanobacterium UCYN‐A and other marine diazotrophs in the North Pacific. Limnol Oceanogr. doi:10.1002/lno.11423.
Hayes, C.T., Fitzsimmons, J.N., Jensen, L.T., Lanning, N.T., Hatta, M., McGee, D. and Boyle, E.A. (2020) A Lagrangian view of trace elements and isotopes in the North Pacific. Journal of Geophysical Research: Oceans, p.e2019JC015862.
Klawonn, I., M.J. Eichner, S.T. Wilson, N. Moradi, B. Thamdrup, S. Kümmel, M. Gehre, A. Khalili, H.P. Grossart, D.M. Karl and H. Ploug (2020) Distinct nitrogen cycling and steep chemical gradients in Trichodesmium colonies. ISME J. 14: 399-412.
Laurenceau, R., Bliem, C., Osburne, M.S., Becker, J.W., Biller, S.J., Cubillos-Ruiz, A. and Chisholm, S.W., 2020. Toward a genetic system in the marine cyanobacterium Prochlorococcus. Access Microbiology, p.acmi000107.
Luo E., Eppley J.M., Romano A.E., Mende D.R., DeLong E.F. 2020. Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column. ISME J. doi: 10.1038/s41396-020-0604-8.
Martinez-Hernandez F., Luo E., Tominaga K., Ogata H., Yoshida T., DeLong E.F., Martinez-Garcia M. 2020. Diel cycling of the cosmopolitan abundant Pelagibacter virus 37-F6: one of the most abundant viruses on earth. 2020. Environ Microbiol Rep. 12:214-219. doi: 10.1111/1758-2229.12825.
Mruwat N., Carlson M.C.G., Goldin S., Ribalet F., Kirzner S., Hulata Y., Beckett S.J., Shitrit D., Weitz J.S., Armbrust E.V., Lindell D. 2020. A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances. The ISME Journal. https://doi.org/10.1038/s41396-020-00752-6.
White A.E., J. Granger, C. Selden, M.R. Gradoville, L. Potts, A. Bourbonnais, R.W. Fulweiler, A.N. Knapp, W.Mohr, P. Moisander, C.R. Tobias, M. Caffin, S.T. Wilson, M. Benavides, S. Bonnet, M. Mulholland, and B.X. Chang (2020) A critical review of the 15N2 tracer method to measure diazotrophic production in pelagic ecosystems. Limnol. Oceanogr. Methods. doi: 10.1002/lom3.10353.
Al-Rasheed, H., Jin, R., and Weitz, J.S. 2019. Caution in inferring viral strategies from abundance correlations in marine metagenomes. Nature Communications, 10:501.
Barone, B., A. R. Coenen, S. J. Beckett, D. J. McGillicuddy, Jr., J. S. Weitz, and D. M. Karl. The ecological and biogeochemical state of the North Pacific Subtropical Gyre is linked to sea surface height. Journal of Marine Research 77.2 (2019). doi:10.1357/002224019828474241.
Barone, B., D. P. Nicholson, S. Ferrón, E. Firing, and D. M. Karl. The estimation of gross oxygen production and community respiration from autonomous time-series measurements in the oligotrophic ocean. Limnology and Oceanography: Methods 17(12) (2019). doi:10.1002/lom3.10340.
Becker, J.W., Hogle, S.L., Rosendo, K. and Chisholm, S.W., 2019. Co-culture and biogeography of Prochlorococcus and SAR11. The ISME journal, p.1.
Berube, P.M., Rasmussen, A., Braakman, R., Stepanauskas, R. and Chisholm, S.W., 2019. Emergence of trait variability through the lens of nitrogen assimilation in Prochlorococcus. eLife, 8, p.e41043.
Boeuf D., Edwards BR, Eppley JM, Hu SK, Poff KE, Romano AE, Caron DA, Karl DM, DeLong EF. Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean. Proc Natl Acad Sci USA. 2019. www.pnas.org/cgi/doi/10.1073/pnas.1903080116.
Boiteau RM, Till CP, Coale TH, Fitzsimmons JN, Bruland KW, Repeta DJ. Patterns of iron and siderophore distributions across the California Current System. Limnology and Oceanography, doi: 10.1002/lno.11046.
Casey J. Björkman KM, Ferrón S, Karl DM. Size dependence of metabolism within marine picoplankton populations. Limnology and Oceanography, doi: 10.1002/lno.11153.
Church, M.J., Cullen, J.J., Karl, D.M. Approaches to Measuring Marine Primary Production. 2018. Encyclopedia of Ocean Sciences, 3rd edition. Cochran, J.K., Bokuniewicz, H.J., Yager, P.L. (Eds.). Volume 1, Pages 484-491.
Coenen, AR, Hu SK, Luo E, Muratore D and Weitz JS. A Primer for Microbiome Time-Series Analysis.
Cornejo‐Castillo, F.M., Muñoz‐Marín, M.D.C., Turk‐Kubo, K.A., Royo‐Llonch, M., Farnelid, H., Acinas, S.G. and Zehr, J.P., 2019. UCYN‐A3, a newly characterized open ocean sublineage of the symbiotic N2‐fixing cyanobacterium Candidatus Atelocyanobacterium thalassa. Environmental microbiology, 21, 111-124.
Durham BP, Boysen AK, Carlson LT, Groussman RD, Heal KR, Cain KR, Morales RL, Coesel SN, Morris RM, Ingalls AE and Armbrust EV. Sulfonate-based networks between eukaryotic phytoplankton and heterotrophic bacteria in the surface ocean. Nature Microbiology doi: 10.1038/s41564-019-0507-5.
Farnelid H, Turk-Kubo K, Ploug H, Ossolinski JE, Collins JR, Van Mooy BA, Zehr JP. Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre. The ISME Journal 3. 2018, p 170. doi: 10.1038/s41396-018-0259-x.
Foreman RK, Björkman KM, Carlson CA, Opalk K, Karl DM. Improved UV photo-oxidation system yields estimates for deep sea dissolved organic nitrogen and phosphorus. Limnology and Oceanography: Methods, in press.
Frischkorn KR, Haley ST, Dyhrman ST. Transcriptional and Proteomic Choreography Under Phosphorus Deficiency and Re-supply in the N2 Fixing Cyanobacterium Trichodesmium erythraeum. Frontiers in Microbiology 10:330. doi: 10.3389/fmicb.2019.00330 .
Grabowski E, Letelier RM, Laws EA, Karl DM. Coupling carbon and energy fluxes in the North Pacific Subtropical Gyre. Nature Communications. https://doi.org/10.1038/s41467-019-09772-z.
Harke MJ, Frischkorn KR, Haley ST, Aylward FO, Zehr JP, Dyhrman ST. Periodic and coordinated gene expression between a diazotroph and its diatom host. 2018. The ISME Journel. 2018. doi: 10.1038/s41396-017-0041-5.
Heal K.R., Kellogg N.A., Carlson L.T., Lionheart R.M., Ingalls A.E. 2019. Metabolomic consequences of cobalamin scarcity in diatoms as revealed through metabolomics. Protist.
Leles SG, Mitra A, Flynn KJ, Tillmann U, Stoecker D, Jeong HJ, Burkholder J, Hansen PJ, Caron DA, Glibert PM, Hallegraeff G (2019) Sampling bias misrepresents the biogeographical significance of constitutive mixotrophs across global oceans. Global Ecology and Biogeography, 28, pp.418-428.
Lin, Y., Weitz, J.S. Spatial interactions and oscillatory tragedies of the commons. Physical Review Letters. 2019. 122: 148102.
Mende D.R., Boeuf D., DeLong E.F. 2019. Persistent core populations shape the microbiome throughout the water column in the North Pacific Subtropical Gyre. Frontiers in Microbiology 10:2273. doi: 10.3389/fmicb.2019.02273
Peoples, L., Donaldson, S., Osuntokun, O., Xia, Q, Nelson, A., Blanton, J., Church, M.J., Bartlett, D.H. 2018. Vertically distinct microbial communities in the Mariana and Kermadec trenches. PLoS ONE 13: e0195102. https://doi.org/10.1371/journal.pone.0195102.
Ribalet, F., Berthiaume, C., Hynes, A. et al. SeaFlow data v1, high-resolution abundance, size and biomass of small phytoplankton in the North Pacific. Sci Data 6, 277 (2019) doi:10.1038/s41597-019-0292-2 .
Robidart J.C., J.D. Magasin, I.N. Shilova, K.A. Turk-Kubo, S.T. Wilson, D.M. Karl, C.A. Scholin, J.P. Zehr (2019) Effects of nutrient enrichment on surface microbial community gene expression in the oligotrophic North Pacific Subtropical Gyre. The ISME Journal. 13, 374-387.
Sosa OA, Repeta DJ, DeLong EF, Ashkezari MD, Karl DM. 2019. Phosphate-limited ocean regions select for bacterial populations enriched in the carbon-phosphorus lyase pathway for phosphonate degradation. Environmental Microbiology doi: 10.1111/1462-2920.14628.
Talmy, D., Beckett, S. J., Taniguchi, D. A., Brussaard, C. P., Weitz, J. S., and Follows, M. J. An empirical model of carbon flow through marine viruses and microzooplankton grazers. Environmental Microbiology 2019. doi: 10.1111/1462-2920.14626.
Talmy, D., Beckett, S.J., Zhang, A, Taniguchi, D., Weitz, J.S., and Follows, M.J. Contrasting controls on microzooplankton grazing and viral infection of microbial prey. Frontiers in Marine Science 2019. 6:182.
Van Mooy, B.A.S. 2019. Synthesis of high molar activity 33P-labled phosphorous acid. Journal of Radioanalytical and Nuclear Chemistry 320:885-888. https://doi.org/10.1007/s10967-019-06548-z
Vislova A, Sosa OA, Eppley JM, Romano AE and DeLong EF (2019) Diel Oscillation of Microbial Gene Transcripts Declines With Depth in Oligotrophic Ocean Waters. Frontiers in Microbiology vol 10, article 2191. doi: 10.3389/fmicb.2019.02191.
Weitz, J.S., Li, G., Gulbudak, H., Cortez, M.H., and Whitaker, R.J. Viral invasion fitness across a continuum from lysis to latency. Virus Evolution. 2019. 5: vez006.
White AE, Giovannoni SJ, Zhao Y, Vergin K, Carlson CA. Elemental content and stoichiometry of SAR11 chemoheterotrophic marine bacteria. Limnology and Oceanography Letters 4, 2019, 44-51. doi: 10.1002/lol2.10103 .
Wilson, S.T., N.J. Hawco, E.V. Armbrust, B. Barone, K.M. Björkman, A.K. Boysen, M. Burgos, T.J. Burrell, J.R. Casey, E.F. DeLong, M. Dugenne, S. Dutkiewicz, S.T. Dyhrman, S. Ferrón, M.J. Follows, R.K. Foreman, C.P. Funkey, M.J. Harke, B.A. Henke, C.N. Hill, A.M. Hynes, A.E. Ingalls, O. Jahn, R.L. Kelly, A.N. Knapp, R.M. Letelier, F. Ribalet, E.M. Shimabukuro, R.K.S. Tabata, K.A. Turk-Kubo, A.E. White, J.P. Zehr, S. John and D.M. Karl (2019) Kilauea lava fuels phytoplankton bloom in the North Pacific Ocean. Science 365, 1040-1044.
Zborowsky, S. and Lindell, D. 2019. Resistance in marine cyanobacteria differs against specialist and generalist cyanophages. PNAS www.pnas.org/cgi/doi/10.1073/pnas.1906897116
Baran N, Goldin S, Maidanik I, Lindell D. Quantification of diverse virus populations in the environment using the polony method. Nat Microbiol. 2018 3:62-72. doi:10.1038/s41564-017-0045-y.
Becker, K.W., Collins, J.R., Durham, B.P., Groussman, R.D., White, A.E., Fredricks, H.F., Ossolinski, J.E., Repeta, D.J., Carini, P., Armbrust, E.V. and Van Mooy, B.A., 2018. Daily changes in phytoplankton lipidomes reveal mechanisms of energy storage in the open ocean. Nature communications, 9(1), p.5179.
Beckett SJ, Weitz JS. The Effect of Strain Level Diversity on Robust Inference of Virus-Induced Mortality of Phytoplankton. Frontiers in Microbiology 2018. 9:1850. doi:10.3389/fmicb.2018.01850 .
Berube PM, Biller SJ, Hackl T, Hogle SL, Satinsky BM, Becker JW, Braakman R, Collins SB, Kelly L, Berta-Thompson J, Coe A, Bergauer K, Bouman HA, Browning TJ, De Corte D, Hassler C, Hulata Y, Jacquot JE, Maas EW, Reinthaler T, Sintes E, Yokokawa T, Lindell D, Stepanauskas R, Chisholm SW. Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments. 2018. Scientific data, 5: 180154. doi: 10.1038/sdata.2018.154.
Biller SJ, Berube PM, Dooley K, Williams M, Satinsky BM, Hackl, T, Hogle, SL, Coe A, Bergauer K, Bouman, HA, Browning TJ, De Corte D, Hassler C, Hulston D, Jacquot JE, Maas EW, Reinthaler T, Sintes E, Yokokawa T, Chisholm SW. Marine microbial metagenomes sampled across space and time. Scientific data 2018. 5, p.180176. doi: 10.1038/sdata.2018.176.
Biller SJ, Coe A, Roggensack SE, Chisholm SW. Heterotroph interactions alter Prochlorococcus transcriptome dynamics during extended periods of darkness.. mSystems. 2018 3(3):e00040-18. doi:10.1128/mSystems.00040-18.
Björkman KM, Duhamel S, Church MJ, Karl DM. Spatial and Temporal Dynamics of Inorganic Phosphate and Adenosine-5′-Triphosphate in the North Pacific Ocean. 2018. Frontiers in Marine Science 5:235.doi: 10.3389/fmars.2018.00235.
Boysen A, Heal KR, Carlson LT, Ingalls AE. Best-matched internal standard normalization in liquid chromatography-mass spectrometry metabolomics applied to environmental samples. Anal Chem. 2018 90(2):1363-1369. doi:10.1021/acs.analchem.7b04400.
Bundy RM, Boiteau RM, McLean C, Turk-Kubo KA, McIlvin MR, Saito MA, Van Mooy BAS, Repeta DJ. Distinct siderophores contribute to iron cycling in the mesopelagic at Station ALOHA. Frontiers in Marine Science 2018 5:61. doi:10.3389/fmars.2018.00061.
Cael BB, Carlson MCG, Follett CL, Follows MJ. Marine virus-like particles and microbes: a linear interpretation. Frontiers in Microbiology. 2018 9:358. doi:10.3389/fmicb.2018.00358.
Cael BB, Bisson K, Follett CL. Can ocean primary production and biological carbon export be related through their probability distributions. Global Biogeochem Cycles. 2018 8 May. doi:10.1029/2017GB005797.
Caron, D.A. and Hu, S.K. Are We Overestimating Protistan Diversity in Nature?. Trends in Microbiology. https://doi.org/10.1016/j.tim.2018.10.009 .
Coenen AR, Weitz JS. Limitations of Correlation-Based Inference in Complex Virus-Microbe Communities. mSystems 2018. 3(4):e00084-18. doi:10.1128/mSystems.00084-18
Dyhrman ST. Microbial biogeochemistry of phosphorus in the sea. 2018 In: Marine Microbial Ecology. 3rd Edition. Gasol JM, Kirchman D. (Eds.)
Enav H, Kirzner S, Lindell D, Mandel-Gutfreund Y and Béjà O. Adaptation to sub-optimal hosts is a driver of viral diversification in the ocean. Nature Communications, (2018) 9: 4698, doi: 10.1038/s41467-018-07164-3.
Follett CL, Dutkiewicz S, Karl DM, Inomura K, Follows MJ. Seasonal resource conditions favor a summertime increase in North Pacific diatom-diazotroph associations. The ISME Journal. 2018 12:1543-1557. doi:10.1038/s41396-017-0012-x.
Follett CL, White AE, Wilson ST, Follows MJ. Nitrogen fixation rates diagnosed from diurnal changes in elemental stoichiometry. Limnology and Oceanography. 2018 63, pp.1911-1923, doi:10.1002/lno.10815.
Frischkorn KR, Haley ST, Dyhrman ST. Coordinated gene expression between Trichodesmium and its microbiome over day-night cycles in the North Pacific Subtropical Gyre. The ISME Journal. 2018 12:997-1007. doi:10.1038/s41396-017-0041-5.
Harding, K., Turk-Kubo, K.A., Sipler, R.E., Mills, M.M., Bronk, D.A. and Zehr, J.P., 2018. Symbiotic unicellular cyanobacteria fix nitrogen in the Arctic Ocean. Proceedings of the National Academy of Sciences, 2018. 115(52), pp.13371-13375.
Heal KR, Qin W, Amin SA, Devol AH, Moffett JW, Armbrust EV, Stahl DA, Ingalls AE. Accumulation of NO2-cobalamin in nutrient-stressed ammonia-oxidizing archaea and in the oxygen deficient zone of the Eastern Tropical North Pacific. Environmental microbiology reports, 2018 10(4), pp.453-457. doi:10.1111/1758-2229.12664.
Henke BA, Turk-Kubo KA, Bonnet S, Zehr JP. Distributions and Abundances of Sublineages of the N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) in the New Caledonian Coral Lagoon. 2018. Frontiers Microbiology 9:554. doi: 10.3389/fmicb.2018.00554.
Horak REA, Qin W, Bertagnolli A, Nelson A, Heal KR, Han H, Heller M, Schauer A, Jeffrey W, Armbrust EV, Moffett JW, Ingalls AE, Stahl DA, Devol AH. Relative impacts of light, temperature and reactive oxygen on thaumarchaeal ammonia oxidation in the North Pacific Ocean. Limnology and Oceanography. 2018 63(2):741-757. doi:10.1002/lno.10665.
Hu SK, Connell PE, Mesrop LY and Caron DA. A Hard Day’s Night: Diel Shifts in Microbial Eukaryotic Activity in the North Pacific Subtropical Gyre. 2018. Frontiers in Marine Science 5:351. doi: 10.3389/fmars.2018.00351
Kavanaugh MT, Church MJ, Davis CO, Karl DM, Letelier RM, Doney SC. ALOHA from the edge: Reconciling three decades of in situ Eulerian observations and geographic variability in the North Pacific Subtropical Gyre. Front Marine Science. 2018 5:130. doi:10.3389/fmars.2018.00130.
Ko YH, Lee K, Takahashi T, Karl DM, Kang S-H, Lee E. Carbon-based estimate of nitrogen fixation-derived net community production in N-depleted ocean gyres. 2018. Global Biogeochem. Cycles, 32. doi: 10.1029/2017GB005634
Kumagai Y, Yoshizawa S, Nakajima Y, Watanabe M, Fukunaga T, Ogura Y, Hayashi T, Oshima K, Hattori M, Ikeuchi M, Kogure K, DeLong EF, Iwasaki W. Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia. The ISME Journal. 2018 12:1329-1343. doi:10.1038/s41396-018-0058-4.
Olson DK, Yoshizawa S, Boeuf D, Iwasaki W, DeLong EF. Proteorhodopsin variability and distribution in the North Pacific Subtropical Gyre. The ISME Journal. 2018 12:1047-1060. doi:10.1038/s41396-018-0074-4.
Rii YM, Bidigare RR, Church MJ. Differential responses of eukaryotic phytoplankton to nitrogenous nutrients in the North Pacific Subtropical Gyre. Frontiers in Marine Science. 2018 5:92. doi:10.3389/fmars.2018.00092.
Rouco M, Frischkorn KR, Haley ST, Alexander H, Dyhrman ST. Transcriptional patterns identify resource controls on the diazotroph Trichodesmium in the Atlantic and Pacific oceans. The ISME Journal. 2018 12:1486-1495. doi:10.1038/s41396-018-0087-z.
Royer, S-J, Ferrón S, Wilson ST, Karl DM. Production of methane and ethylene from plastic in the environment. PLOS One. 2018. 13(8): e0200574. doi:10.1371/journal.pone.0200574.
Thompson AW, van den Engh G, Ahlgren NA, Kouba K, Ward S, Wilson ST and Karl DM (2018) Dynamics of Prochlorococcus Diversity and Photoacclimation During Short-Term Shifts in Water Column Stratification at Station ALOHA. Frontiers in Marine Science 5:488. doi: 10.3389/fmars.2018.00488
Turk-Kubo KA, Connell P, Caron D, Hogan ME, Farnelid HM, Zehr JP. In Situ Diazotroph Population Dynamics Under Different Resource Ratios in the North Pacific Subtropical Gyre. 2018. Frontiers Microbiology 9:1616. doi: 10.3389/fmicb.2018.01616.
Weber, T., John, S., Tagliabue, A. and DeVries, T., 2018. Biological uptake and reversible scavenging of zinc in the global ocean. Science, 361(6397), pp.72-76.
White AE, Watkins-Brandt KS, Church MJ. Temporal variability of Trichodesmium spp. and diatom-diazotroph assemblages in the North Pacific Subtropical Gyre. Frontiers in Marine Science 2018 5:27. doi:10.3389/fmars.2018.00027.
Wilson, ST, HW Bange, J Barnes, A Borges, I Brown, J Bullister, M Burgos, DW Capelle, M Casso, M de la Paz, L Farías, L Fenwick, S Ferrón, G Garcia, M Glockzin, DM Karl, A Kock, S Laperriere, CS Law, CC Manning, A Marriner, J-P Myllykangas, JW Pohlman, AP Rees, A Santoro, P Tortell, D Wisegarver, RC Upstill-Goddard, GL Zhang, G. Rehder. An intercomparison of oceanic methane and nitrous oxide measurements. 2018 Biogeosciences 15, 5891–5907, doi: 10.5194/bg-15-5891-2018
Wilson, ST and MJ Church. Microbial ecology in the North Pacific Subtropical Gyre. Frontiers in Marine Science 5:334 doi: 10.3389/fmars.2018.00334.
Wolf, M.J., Coe, A., Dove, L.A., Zawadowicz, M.A., Dooley, K., Biller, S.J., Zhang, Y., Chisholm, S.W. and Cziczo, D.J., 2018. Investigating the Heterogeneous Ice Nucleation of Sea Spray Aerosols Using Prochlorococcus as a Model Source of Marine Organic Matter. Environmental science & technology, 53(3), pp.1139-1149.
Zakem EJ, Al-Haj A, Church MJ, van Dijken GL, Dutkiewicz S, Foster SQ, Fulweiler RW, Mills MM, Follows MJ. Ecological control of nitrite in the upper ocean. Nature Communications. 2018 9:1206. doi:10.1038/s41467-018-03553-w.
Aylward FO, Boeuf D, Mende DR, Wood-Charlson EM, Vislova A, Eppley JM, Romano AE, DeLong EF. Diel cycling and long-term persistence of viruses in the ocean's euphotic zone. PNAS USA. 2017 114(43):11446-11451. doi:10.1073/pnas.1714821114.
Beckett SJ, Weitz JS. Disentangling niche competition from grazing mortality in phytoplankton dilution experiments. PLoS ONE. 2017 12(5): e0177517. doi:10.1371/journal.pone.0177517.
Berney C, Ciuprina A, Bender S, Brodie J, Edgcomb E, Kim E, Rajan J, Wegener Parfrey L, Adl S, Audic S, Bass D, Caron DA, Cochrane G, Czech L, Dunthorn M, Geisen S, Oliver Glöckner F, Mahóe F, Quast C, Kaye JZ, Simpson AGB, Stamatakis A, del Campo J, Yilmaz P, de Vargas C. UniEuk: Time to speak a common language in protistology! J Euk Microbiol. 2017 64(3):407-411. doi:10.1111/jeu.12414.
Biller SJ, McDaniel LD, Breitbart M, Rogers E, Paul JH, Chisholm SW. Membrane vesicles in sea water: Heterogeneous DNA content and implications for viral abundance estimates. The ISME Journal. 2017 11(2):394-404. doi:10.1038/ismej.2016.134.
Böttjer D, Dore JE, Karl DM, Letelier RM, Mahaffey C, Wilson ST, Zehr J, Church MJ. Temporal variability of nitrogen fixation and particulate nitrogen export at Station ALOHA. Limnology and Oceanography. 2017 62:200-216. doi:10.1002/lno.10386.
Braakman R, Follows MJ, Chisholm SW. Metabolic evolution and the self-organization of ecosystems. PNAS USA. 2017 114(15):E3091-E3100. doi:10.1073/pnas.1619573114.
Cael BB, Bisson K, Follows MJ. How have recent temperature changes affected the efficiency of ocean biological carbon export? Limnology and Oceanography Letters. 2017 2(4):113-118. doi:10.1002/lol2.10042.
Caron DA. Acknowledging and incorporating mixed nutrition into aquatic protistan ecology, finally. Enviro Microbiol Rep. 2017 9(1):41-43. doi:10.1111/1758-2229.12514.
Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB (2017) Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nature Reviews Microbiology, 15(1), p.6.
Caron DA, Connell PE, Schaffner RA, Schnetzer A, Fuhrman JA, Countway PD, Kim DY. Planktonic food web structure at a coastal time-series site: I. Partitioning of microbial abundances and carbon biomass. Deep-Sea Research I. 2017 121:14-29. doi:10.1016/j.dsr.2016.12.013.
Casey JR, Ferrón S, Karl DM. Light-enhanced microbial organic carbon yield. Frontiers in Microbiology. 2017 8:2157. doi:10.3389/fmicb.2017.02157.
Cermak N, Becker JW, Knudsen SM, Chisholm SW, Manalis SR, Polz MF. Direct single cell biomass estimates for marine bacteria via Archimedes' principle. The ISME Journal. 2017 11(3):825-828. doi:10.1038/ismej.2016.161.
Chisholm SW. Prochlorococcus. Current Biol. 2017 27(11):R431-510. doi:10.1016/j.cub.2017.02.043.
Clayton S, Dutkiewicz S, Jahn O, Hill CN, Heimbach CN, Follows MJ. Biogeochemical versus ecological consequences of modeled ocean physics. Biogeosciences. 2017 14(11):2877-2889. doi:10.5194/bg-14-2877-2017.
Connell PE, Campbell V, Gellene AG, Hu SK, Caron DA. Planktonic food web structure at a coastal time-series site: II. Spatiotemporal variability of microbial trophic activities. Deep-Sea Research I. 2017 121:210.223. doi:10.1016/j.dsr.2017.01.007.
Cubillos-Ruiz A, Berta-Thompson JW, Becker JW, van der Donk WA, Chisholm SW. Evolutionary radiation of lanthipeptides in marine cyanobacteria. PNAS USA. 2017 114(27):E5424-E5433. doi:10.1073/pnas.1700990114.
Cunningham BR, John SG The effect of iron limitation on cyanobacteria major nutrient and trace element stoichiometry. Limnology and Oceanography. 2017 62(2):846-858. doi:10.1002/lno.10484.
Duhamel S, Bjorkman KM, Repeta DJ, Karl DM. Phosphorus dynamics in the southeast subtropical Pacific Ocean. Prog Oceanogr. 2017 151:261-274. doi:10.1016/j.pocean.2016.12.007.
Eichner MJ, Klawonn I, Wilson ST, Littmann S, Whitehouse M, Church MJ, Kuypers MM, Karl DM, Ploug H. Chemical microenvironments and single-cell carbon and nitrogen uptake in field-collected colonies of Trichodesmium under different pCO2. The ISME Journal. 2017 11:1305-1317. doi:10.1038/ismej.2017.15.
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