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Publications
Coale, T. H., Loconte, V., Turk-Kubo, K. A., Vanslembrouck, B., Mak, W. K. E., Cheung, S., Ekman, A., Chen, J.-H., Hagino, K., Takano, Y., Nishimura, T., Adachi, M., Le Gros, M., Larabell, C., & Zehr, J. P. (2024). Nitrogen-fixing organelle in a marine alga. Science, 384(6692), 217-222. doi: 10.1126/science.adk1075.
Cornejo-Castillo F. M., Inomura K., Zehr J. P. and Follows M.J. Metabolic tradeoffs constrain the cell size ratio in a nitrogen-fixing symbiosis. 187(7), 1762-1768.E1769. doi: 10.1016/j.cell.2024.02.016.
Bachi G., Morelli E., Gonnelli M., Balestra C., Casotti R., Evangelista V., Repeta D.J., Santinelli C. (2023) Fluorescent properties of marine phytoplankton exudates and lability to marine heterotrophic prokaryotes degradation. Limnol Oceanogr. 68:982-1000. doi: 10.1002/lno.12325.
Berube P.M., O’Keefe T.J., Rasmussen A., LeMaster T., Chisholm S.W. (2023) Production and cross-feeding of nitrite within Prochlorococcus populations. mBio. 14:e01236-23. doi: 10.1128/mbio.01236-23.
Biller S.J., Coe A., Arellano A.A., Dooley K., Silvestri S.M., Gong J.S., Yeager E.A., Becker J.W., Chisholm S.W. (2023) Environmental and taxonomic drivers of bacterial extracellular vesicle production in marine ecosystems. Appl Environ Microbiol. 89:e00594-23. doi: 10.1128/aem.00594-23.
Capovilla G., Braakman R., Fournier G.P., Hackl T., Schwartzman J., Lu X., Yelton A., Longnecker K., Kido Soule M.C., Thomas E., Swarr G., Mongera A., Payette J.G., Castro K.G., Waldbauer J.R., Kujawinski E.B., Cordero O.X., Chisholm S.W. (2023) Chitin utilization by marine picocyanobacterial and the evolution of a planktonic lifestyle. Proc Natl Acad Sci USA. 120:e2213271120. doi: 10.1073/pnas.2213271120.
Capovilla G., Castro K.G., Collani S., Kearney S.M., Kehoe D.M., Chisholm S.W. (2023) Chitin degradation by Synechococcus WH7803. Sci Rep. 13:19944. doi: 10.1038/s41598-023-47332-0.
Carnicer O., Hu Y.Y., Ebenezer V., Irwin A.J., Finkel Z.V. (2023) Genomic architecture constrains macromolecular allocation in dinoflagellates. Protist 174(6): 125992. doi: 10.1016/j.protis.2023.125992.
Dai M., Luo Y.-W., Achterberg E.P, Browning T.J., Cai Y., Cao Z., Chai F. Church M.J., et al. (2023) Upper ocean biogeochemistry of oligotrophic subtropical gyres: From nutrient sources to carbon export. Reviews in Geophysics 61(3): e2022RG000800. doi: 10.1029/2022RG000800.
Dugenne M., Gradoville M.R., Church M.J., Barone B., Wilson S.T., Sheyn U., Harke M.J., Björkman K.M., Hawco N.J., Hynes A.M., Ribalet F., Karl D.M., DeLong E.F., Dyhrman S.T., Armbrust E.V., John S., Eppley J.M., Harding K., Stewart B., Cabello A.M., Turk-Kubo K.A., Caffin M., White A.E., Zehr J.P. (2023) Nitrogen fixation in mesoscale eddies of the North Pacific Subtropical Gyre: patterns and mechanisms. Glob Biogeochem Cy 37: e2022GB007386. doi: 10.1029/2022GB007386.
Garcia C., Barone B., Ferrón S., Karl D. (2023) Assessing changes in marine biogeochemical processes leading to carbon dioxide removal with autonomous underwater vehicles. In: Frontiers in Ocean Observing: Emerging Technologies for Understanding an d Managing a Changing Ocean (Kappel ES et al., Eds.), Oceanography 36(Supplement 1):11-13. doi: 10.5670/oceanog.2023.s1.3.
Gleich S.J., Hu S.K., Krinos A.I. and Caron D.A. In press. Protistan community composition and metabolism in the North Pacific Subtropical Gyre: Influences of mesoscale eddies and depth. Environmental Microbiology. doi: 10.1111/1462-2920.16556.
Graff van Creveld S., Coesel S.N., Blaskowski S., Groussman R.D, Schatz M.J., Armbrust E.V. (2023) Divergent functions of two clades of flavodoxin in diatoms mitigate oxidative stress and iron limitation. eLife. doi: 10.7554/eLife.84392.
Groussman R.D, Blaskowski S., Coesel S.N., Armbrust E.V. (2023) MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes. Scientific Data, in press.
Hackl T., Laurenceau R., Ankenbrand M.J., Bliem C., Cariani Z., Thomas E., Dooley K.D., Arellano A.A., Hogle S.L., Berube P., Leventhal G.E., Luo E., Eppley J.M., Zayed A.A., Beaulaurier J., Stepanauskas R., Sullivan M.B., DeLong E.F., Biller S.J., Chisholm S.W. (2023) Novel integrative elements and genomic plasticity in ocean ecosystems. Cell. 186:47-62. doi: 10.1016/j.cell.2022.12.006.
Karl, D. and Church M. (2023) Microbial oceanography. In D. Gibson (ed.), Oxford Bibliographies in Ecology. Oxford University Press, NY. In press.
Knor L., Sabine C., Sutton A., Dore J., White A.E., Potemra J. and Weller R. (2023) Quantifying net community production and calcification at Station ALOHA near Hawai’i: Insights and limitations from a dual tracer carbon budget approach. Global Biogeochemical Cycles 37(7): e2022GB007672. doi: 10.1029/2022GB007672.
Kujawinski E.B., Braakman R., Longnecker K., Becker J.W., Chisholm S.W., Dooley K., Kido Soule M.C., Swarr G.J., Halloran K. (2023) Metabolite diversity among representatives of divergent Prochlorococcus ecotypes. mSystems, 8:e01261-22. doi: 10.1128/msystems.01261-22.
Kumler W., Hazelton B.J., Ingalls A.E. (2023) Picky with peakpicking: assessing chromatographic peak quality with simple metrics in metabolomics. BMC Bioinformatics 24, Article 404. doi: 10.1186/s12859-023-05533-4.
Lange N., Fielder B., Alvarez M., Benoit-Cattin A., Benway H., Buttigieg P.L., Coppola L., Currie K., Flecha S., Hondo M., Huertas I., Lauvset S.K., Muller-Karger F., Kortzinger A., O’Brien K.M., Olafsdottir S.R., Pacheco F.C., Rueda-Roa D., Skjelvan I., Wakita M., White A.E., and Tanhua T. (2023) Synthesis Product for Ocean Time-Series (SPOTS) – A ship-based biogeochemical pilot. Earth System Science Data. doi: 10.5194/essd-2023-238.
Li F., Burger A., Eppley J.M., Poff K.E., Karl D.M., DeLong E.F. (2023) Planktonic microbial signatures of sinking particle export in the open ocean's interior. Nat Commun. 14:7177. doi: 10.1038/s41467-023-42909-9.
Li Z.K., Irwin A.J., Finkel Z.V. (2023) Common environmental stress responses in a model marine diatom. New Phytologist 240(1), pp. 272-284. doi: 10.1111/nph.19147.
McGinty N., Irwin A.J., Finkel Z.V., Dutkiewicz S. (2023) Using ecological partitions to assess zooplankton biogeography and seasonality. Frontiers 10: 989770. doi: 10.3389/fmars.2023.989770.
Muñoz-Marin, MdC., Magasin J.D., Zehr J.P. (2023) Open ocean and coastal strains of the N2-fixing cyanobacterium UCYN-A have distinct transcriptomes. PLoS ONE 18: e0272674. doi: 10.1371/journal.pone.0272674.
Muratore D., Bertagnolli A.D., Bristow L.A., Thamdrup B., Weitz J.S. and Stewart F.J. (2023) Microbial and Viral Genome and Proteome Nitrogen Demand Varies across Multiple Spatial Scales within a Marine Oxygen Minimum Zone. Msystems, 8(2), pp.e01095-22. doi: 10.1128/msystems.01095-22.
Ngugi D.K., Acinas S.G., Sánchez P., Gasol J.M., Agusti S., Karl D.M., Duarte C.M. (2023) Abiotic selection of microbial genome size in the global ocean. Nat Commun. 14: 1384. doi: 10.1038/s41467-023-36988-x.
Park J., Durham B.P., Key R.S., Groussman R.D., Bartolek Z., Pinedo‐Gonzalez P., Hawco N.J., John S.G., Carlson M.C.G., Lindell D., Juranek L.W., Ferrón S., Ribalet F., Armbrust E.V., Ingalls A.E., Bundy R.M. (2023) Siderophore production and utilization by marine bacteria in the North Pacific Ocean. Limnology and Oceanography. 68(7), pp. 1636-1653. doi: 10.1002/lno.12373.
Salas K., Cabello A.M., Turk-Kubo K.A., Zehr J.P., Cornejo-Castillo F.M. (2023) Primer design for the amplification of the ammonium transporter genes from the uncultured haptophyte algal species symbiotic with the marine nitrogen-fixing cyanobacterium UCYN-A1. Front Microbiol 14:1130695. doi: 10.3389/fmicb.2023.1130695.
Shao, Z., Xu Y., Wang H., Luo W., Wang L., Huang Y., Agawin N. S. R., Ahmed A., Benavides M., Bentzon-Tilia M. et al. (2023). Global oceanic diazotroph database version 2 and elevated estimate of global N2 fixation. Earth System Science Data, 15(8). doi: 10.5194/essd-2023-13.
Sheward R.M., Liefer J.D., Irwin A.J., Finkel Z.V. (2023) Elemental stoichiometry of the key calcifying marine phytoplankton Emiliania huxleyi under ocean climate change: a meta-analysis. Global Change Biology, 29(15), pp. 4259-4278. doi: 10.1111/gcb.16807.
Slater E.R.S., Turk-Kubo K.A., Hallstrøm S., Kesy K., Laas P., Magasin J., Zehr, J.P., Labrenz M., Riemann L. (2023). Composition and distribution of diazotrophs in the Baltic Sea. Estuar. Coast. Shelf Sci. 294, 108527. doi: 10.1016/j.ecss.2023.108527.
Turk-Kubo K.A., Henke B.A., Gradoville M.R., Magasin J.D., Church M.J., Zehr J.P. (2023) Seasonal and spatial patterns in diazotroph community composition at Station ALOHA. Front Mar Sci. 10:1130158. doi: 10.3389/fmars.2023.1130158.
Wan X.S., Sheng H.-X., Dai M., Casciotti K.L., Church M.J., Zou W., Liu L., Shen H., Zhou K., Ward B.B., Kao S.-J. (2023) Epipelagic nitrous oxide production offsets carbon sequestration by the biological pump. Nat Geosci 16:29-36. doi: 10.1038/s41561-022-01090-2.
Zehr J.P. and Capone D.G. (2023). Unsolved mysteries in marine nitrogen fixation. Trends Microbiol. 2287. doi: 10.1016/j.tim.2023.08.004.
Zehr J.P., Riemann L. (2023) Quantification of gene copy numbers is valuable in marine microbial ecology: A comment to Meiler et al. (2022). Limnol Oceanogr. doi: 10.1002/lno.12364.
Ziveri P. Gray W.R., Anglada-Ortiz G., Manno C., Grelaud M., Incarbona A., Buchanan Rae J.W., Subhas A., Pallacks S., White A.E., Adkins J.F., and Berelson W. (2023) Pelagic calcium carbonate production and shallow dissolution in the North Pacific Ocean. Nature Communications 14, 805. doi: 10.1038/s41467-023-36177-w.
Acker M., Hogle S.L., Berube P.M., Hackl T., Coe A., Stepanauskas R.M., Chisholm S.W., Repeta D.J. (2022) Phosphonate production by marine microbes: exploring new sources and potential function. Proc Natl Acad Sci USA 119 (11), e2113386119. doi: 10.1073/pnas.2113386119.
Allen J.G., Dugenne M., Letelier R.M., White A.E. (2022) Optical determinations of photophysiology along an ecological gradient in the North Pacific Ocean. Limnol Oceanogr. 67:713-725. doi: 10.1002/lno.12031.
Baran N., Carlson M.C.G., Sabehi G., Peleg M., Kondratyeva K., Pekarski I., Lindell D. (2022) Widespread yet persistent low abundance of TIM5-like cyanophages in the oceans. Environ Microbiol. 24: 6476-6492. doi: 10.1111/1462-2920.16210.
Barone B., Church M., Dugenne M., Hawco N., Jahn O., White A., John S., Follows M., Delong E., and Karl D. (2022) Biogeochemical dynamics in adjacent mesoscale eddies of opposite polarity. Glob Biogeochem Cy. doi: 10.1029/2021GB007115.
Barone B., Letelier R.M., Rubin K.H., and Karl D.M. (2022) Satellite detection of a massive phytoplankton bloom following the 2022 submarine eruption of the Hunga Tonga-Hunga Ha’apai volcano. Geophys Res Lett. 49:e2022GL099293. doi: 10.1029/2022GL099293.
Bartolek Z., Graff van Creveld S., Coesel A.N., Blaskowski S., Schatz M., Morales R., Armbrust E.V. (2022) Flavobacterial exudates disrupt cell cycle progression and metabolism of the diatom Thalassiosira pseudonana. ISME J. doi: 10.1038/s41396-022-01313-9.
Biller S.J., Lundeen R.A., Hmelo L.R., Becker J.W., Arellano A.A., Dooley K., Heal K.R., Carlson L.T., Van Mooy B.A.S., Ingalls A.E., and Chisholm S.W. (2022) Prochlorococcus extracellular vesicles: Molecular composition and adsorption to diverse microbes. Environ Microbiol. 24 (1), 420-435. doi: 10.1111/1462-2920.15834.
Boysen A.K., Durham B.P., Kumler W., Key R.S., Heal K.R., Carson L.T., Groussman R.D., Armbrust E.V., and Ingalls A.E. (2022) Glycine betaine uptake and metabolism in marine microbial communities. Environ Microbiol. 24:2380-2403. doi: 10.1111/1462-2920.16020.
Britten G.L., Padalino C., Forget G., Follows M.J. (2022) Seasonal photoacclimation in the North Pacific Transition Zone. Glob Biogeochem Cy. 36:e2022GB007324. doi: 10.1029/2022GB007324.
Carlson M.C.G., Ribalet F., Maidanik I., Durham B.P., Hulata Y., Ferrón S., Weissenbach J.,Shamir N., Goldin S., Baran N., Cael B.B., Karl D.M., White A.E., Armbrust E.V., and Lindell D. (2022) Viruses affect picocyanobacterial abundance and biogeography in the North Pacific Ocean. Nat Microbiol, 7:570-580. doi: 10.1038/s41564-022-01088-x.
Casey J.R., Boiteau R.M., Engqvist M.K.M., Finkel Z.V., Li G., Liefer J., Muller C.L., Munoz N., Follows M.J. (2022) Basin-scale biogeography of marine phytoplankton reflects cellular-scale optimization of metabolism and physiology. Science Advances 8(3): eabl4930. doi: 10.1126/sciadv.abl4930.
Chen C.C., Rodriguez I.B., Chen Y.L.L., Zehr J.P., Chen Y.R., Hsu S.T.D., Yang S.C., Ho T.Y. (2022) Nickel superoxide dismutase protects nitrogen fixation in Trichodesmium. Limnol. Oceanogr. Lett. 7(4), pp. 363-371. doi: 10.1002/lol2.10263.
Cheung S.Y., Liu K., Turk-Kubo K.A., Nishioka J., Suzuki K., Landry M.R., Zehr J.P., Leung S., Deng L., Liu H. (2022) High biomass turnover rates of endosymbiotic nitrogen‐fixing cyanobacteria in the western Bering Sea. Limnol. Oceanogr. Lett. 7(6), pp. 501-509. doi: 10.1002/lol2.10267.
Durham B.P., Boysen A.K., Heal K.R., Carlson L.T., Boccamazzo R., Deodato C.R., Qin W., Cattolico R.A., Armbrust E.V., Ingalls A.E. (2022) Chemotaxonomic patterns in intracellular metabolites of marine microbial plankton. Front Mar Sci. 9:864796. doi: 10.3389/fmars.2022.864796.
Ebenezer V., Hu Y., Carnicer O., Irwin A.J., Follows M.J., Finkel Z.V. (2022) Elemental and macromolecular composition of the marine Chloropicophyceae, a major group of oceanic photosynthetic picoeukaryotes. Limnol Oceanogr. 67: 540-551. doi: 10.1002/lno.12013.
Eppley J.M., Biller S.J., Luo E., Burger A., DeLong E.F. (2022) Marine viral particles reveal an expansive repertoire of phage-parasitizing mobile elements. Proc Natl Acad Sci USA. 2022 Oct 25;119(43):e2212722119. doi: 10.1073/pnas.2212722119.
Follett C.L., Dutkiewicz S., Ribalet F., Zakem E., Caron D., Armbrust E.V., Follows M.J. (2022) Trophic interactions with heterotrophic bacteria limit the range of Prochlorococcus. Proc Natl Acad Sci USA. 119:e2110993118. doi: 10.1073/pnas.2110993118.
Gleich S.J., Cram J.A., Weissman J.L., Caron D.A. (2022) NetGAM: Using generalized additive models to improve the predictive power of ecological network analyses constructed using time-series data. ISME Comm. doi: 10.1038/s43705-022-00106-7.
Gradoville M.R., Dugenne M., Hynes A.M., Zehr J.P. and White A.E. (2022) Empirical relationship between nifH gene abundance and diazotroph cell concentration in the North Pacific Subtropical Gyre. J. Phycol. 58(6), pp. 829-833. doi: 10.1111/jpy.13289.
Gupta M., Williams R.G., Lauderdale J.M., and Follows M.J. (2022) A nutrient relay sustains subtropical ocean productivity. Proc Natl Acad Sci USA. 119:e2206504119. doi: 10.1073/pnas.2206504119.
Harding K.J., Turk-Kubo K.A., Mak E.W.K., Weber P.K., Mayali X., Zehr J.P. (2022) Cell-specific measurements show nitrogen fixation by particle-attached putative non-cyanobacterial diazotrophs in the North Pacific Subtropical Gyre. Nature Comm. 13(1), 6979. doi: 10.1038/s41467-022-34585-y.
Hawco N.J., Yang S.-C., Pinedo-González P., Black E.E., Kenyon J., Ferrón S., Bian X., John S.G. (2022) Recycling of dissolved iron in the North Pacific Subtropical Gyre. Limnol Oceanogr. 67:2448-2465. doi: 10.1002/lno.12212.
Heal K.R., Maloney A.E., Ingalls A.E., Bundy R.M. (2022) Diverse arsenic-containing lipids in the surface ocean. Limnol Oceanogr Lett. 7(1):43-51. doi: 10.1002/lol2.10216.
Henderikx-Freitas F., Allen J., Lansdorp B., and White A.E. (2022) Diel variability in the estimated refractive index of bulk oceanic particles. Optics Express, 30(24): pp. 44141-44159. doi: 10.1364/OE.469565.
Hogle S.L., Hackl T., Bundy R.M., Park J., Satinsky B., Hiltunen T., Biller S., Berube P.M., and Chisholm S.W. (2022) Siderophores as an iron source for picocyanobacteria in deep chlorophyll maximum layers of the oligotrophic ocean. ISME J. 16:1636-1646. doi: 10.1038/s41396-022-01215-w.
Holm H.C., Fredricks H.F., Bent S.M., Lowenstein D.P., Ossolinski J.E., Becker K.W., Johnson W.M., Schrage K., Van Mooy B.A.S. (2022) Global ocean lipidomes show a universal relationship between temperature and lipid unsaturation. Science 376:1487-1491. doi: 10.1126/science.abn7455.
Hu Y.-Y., Irwin A.J., Finkel Z.V. (2022) Improving quantification of particulate phosphorus. Limnol Oceanogr Meth. 20: 729-740. doi: 10.1002/lom3.10517.
Inomura K., Deutsch C., Jahn O., Dutkiewicz S., and Follows M.J. (2022) Global patterns in marine organic matter stoichiometry driven by phytoplankton ecophysiology. Nat Geosci. doi: 10.1038/s41561-022-01066-2.
John S.G., Kelly R.L., Bian X., Fu F., Smith M.I., Lanning N.T., Liang H., Pasquier B., Seelen E.A., Holzer M., Wasylenki L., Conway T.M., Fitzsimmons J.N., Hutchins D.A., Yang S.-C. (2022) The biogeochemical balance of oceanic nickel cycling. Nat Geosci. 15:906-912. doi: 10.1038/s41561-022-01045-7.
Karl D.M., Björkman K.M., Church M.J., Fujieki L.A., Grabowski E.M., Letelier R.M. (2022) Temporal dynamics of total microbial biomass and particulate detritus at Station ALOHA. Prog Oceanogr. 205:102803. doi: 10.1016/j.pocean.2022.102803.
Kearney S.M., Coe A., Castro K.G., Chisholm S.W. (2022) Filter plating method for rendering Picocyanobacteria cultures free of Heterotrophic bacterial contaminants and clonal. Front Microbiol. 13, 821803. doi: 10.3389/fmicb.2022.821803.
Kumler W., Ingalls A.E. (2022) Tidy data neatly resolves mass-spectrometry ragged arrays. R Journal 14/3, 193-202, doi: 10.32614/RJ-2022-050.
Kwon E.Y., Sreeush M.G., Timmermann A., Karl D.M., Church M.J., Lee S.-S. and Yamaguchi R. (2022) Nutrient update plasticity in phytoplankton sustains future ocean net primary production. Sci Adv. 8:eadd2475. doi: 10.1126/sciadv.add2475.
Lambert B.S., Groussman R.D., Schatz M.J., Coesel S.N., Durham B.P., Alverson A.J., White A.E. and Armbrust E.V. (2022). The dynamic trophic architecture of open-ocean protist communities revealed through machine-guided metatranscriptomics. Proc Natl Acad Sci USA. doi: 10.1073/pnas.2100916119.
Leu A.O., Eppley J.M., Burger A., DeLong E.F. (2022) Diverse genomic traits differentiate sinking-particle-associated versus free-living microbes throughout the oligotrophic open ocean water column. mBio.13:e0156922. doi: 10.1128/mbio.01569-22.
Li Z.K., Zhang Y., Li W., Irwin A.J., Finkel Z.V. (2022) Conservation and architecture of housekeeping genes in the model marine diatom Thalassiosira pseudonana. New Phytologist 234(4), pp. 1363-1376. doi: 10.1111/nph.18039.
Linney M.D., Eppley J.M., Romano A.E., Luo E., DeLong E.F., Karl D.M. (2022) Microbial sources of exocellular DNA in the ocean. Appl Environ Microbiol. 88:02093-21. doi: 10.1128/aem.02093-21.
Luo E., Leu A.O., Eppley J.M., Karl D.M., DeLong E.F. (2022) Diversity and origins of bacterial and archaeal viruses on sinking particles reaching the abyssal ocean. ISME J. 16:1627-1635. doi: 10.1038/s41396-022-01202-1.
Maidanik I., Kirzner S., Pekarski I., Arsenieff L., Tahan R., Carlson M.C.G., Shitrit D., Baran N., Goldin S., Weitz J.S. and Lindell D. (2022) Cyanophages from a less virulent clade dominate over their sister clade in global oceans. ISME J. 16: 2169-2180. doi: 10.1038/s41396-022-01259-y.
Martiny A.C., Hagstrom G.I., DeVries T., Letscher R.T., Britten G.L., Garcia C.A., Galbraith E., Karl D., Levin S.A., Lomas M.W., Moreno A.R., Talmy D., Wang W., Matsumoto K. (2022) Marine phytoplankton resilience may moderate oligotrophic ecosystem responses and biogeochemical feedbacks to climate change. Limnol Oceanogr. 67: S378-S389. doi: 10.1002/lno.12029.
Meiler S., Britten G.L., Dutkiewicz S., Gradoville M.R., Moisander P.H., Jahn O., Follows M.J. (2022) Constraining uncertainties of diazotroph biogeography from nifH gene abundance. Limnol Oceanogr. 67:816-829. doi: 10.1002/lno.12036.
Moran M.A., Kujawinski E.B., Schroer W.F., Amin S.A., Bates N.R., Bertrand E.M., Braakman R., Brown T.C., Covert M.W., Doney S.C., Dyhrman S.T., Edison A.S., Murat Eren A., Levine N.M., Li L., Ross A.C., Saito M.A., Santoro A.E., Segrè D., Shade A., Sullivan M.B., and Vardi A. (2022) Microbial metabolites in the marine carbon cycle. Nat Microbiol. 7: 508-523. doi: 10.1038/s41564-022-01090-3.
Muñoz-Marín M.d.C., Duhamel S., Björkman K.M., Magasin J.D., Díez J., Karl D.M., and García-Fernández J.M. (2022) Differential timing for glucose assimilation in Prochlorococcus and coexistent microbial populations in the North Pacific Subtropical Gyre. Microbiol Spectr. 10: e0246622. doi: 10.1128/spectrum.02466-22.
Muratore D., Boysen A.K., Harke M.J., Becker K.W., Casey J.R., Coesel S.N., Mende D.R., Wilson S.T., Aylward F.O., Eppley J.M., Vislova A., Peng S., Rodriguez-Gonzalez R.A., Beckett S.J., Armbrust E.V., DeLong E.F., Karl D.M., White A.E., Zehr J.P., Van Mooy B.A.S., Dyhrman S.T., Ingalls A.E., Weitz J.S. (2022) Complex marine microbial communities partition metabolism of scarce resources over the diel cycle. Nat Ecol and Evol. 6: 218-229. doi: 10.1038/s41559-021-01606-w.
Pasquier B., Hines S.K.V., Liang H., Wu Y., Goldstein S.L., John S.G. (2022) GNOM v1.0: an optimized steady-state model of the modern marine neodymium cycle. Geosci Model Dev. 15:4625-4656. doi: 10.5194/gmd-15-4625-2022.
Pasquier B., Primeau F.W., John S.G. (2022) AIBECS.jl: A tool for exploring global marine biogeochemical cycles. J Open Source Softw. 7:3814. doi: 10.21105/joss.03814.
Rii Y.M., Peoples L.M., Karl D.M. and Church M.J. (2022) Seasonality and episodic variation in picoeukaryote diversity and structure reveals community resilience to disturbances in the North Pacific Subtropical Gyre. Limnol Oceanogr. 67: S331-S351. doi: 10.1002/lno.11916.
Sacks J.S., Heal K.R., Boysen A.K., Carlson L.T., Ingalls A.E. (2022) Quantification of dissolved metabolites in environmental samples through cation-exchange solid-phase extraction paired with liquid chromatography-mass spectrometry. Limnol Oceanogr Meth. 20:683-700. doi: 10.1002/lom3.10513.
Schvarcz C.R., Wilson S.T., Caffin M., Stancheva R., Li Q., Turk-Kubo K.A., White A.E., Karl D.M., Zehr J.P., and Steward G.F. (2022) Overlooked and widespread pennate diatom-diazotroph symbiosis in the sea. Nat Comm. doi: 10.1038/s41467-022-28065-6.
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